Photosystem II and the Oxygen Evolving Site

Home |

Photosystem II Movies PART I

The structure of the OEC

OEC mechanism 1977

 

 

 

 

 

 

 

 

Wydrzynski (1977)

The structure of the Oxygen Evolving Complex (OEC) has been a work in progress for decades. Without crystallographic insight a variety of spectroscopic approaches have been employed to define the the ligands to the Mn ions, the number of Mn ions, the involvement of cofactors such as Ca, and the distances between the Mn ions. A review of this spectroscopy [1] can be found <pdf>. The figure on the left was possibly the first model of the OEC that used 4 Mn ions and was added at the insistence of a examiner to a thesis in 1977. It was subsequently published in [2a]. Since that time considerable effort has been directed at understanding the mechanism and structure of the catalyst. Molecular oxygen after all is the most vital of ingredients for life on earth and the molecular origins of this molecule have important consequences.

<Back to Photosystem II>

  • Over the past few years these structures have been improving and the haze has been clearing for this complex mechanism. The very first PSII structures came from a group in London [3] with ~8Å resolution and using 2-D x-ray crystallography and suggested locations of chlorophylls in the reaction centre and some general structural information.
  • Following this in February 2001 the first data from a 3-D crystal was published from a group in Berlin at 3.8Å resolution (pdb 1FE1) [4]. This work providing a more detailed view of the chlorophylls and a density (blob) that contained the Mn ions. This blob clearly indicated the location of the catalytic site and revealed there were at least 4 metals present, but at the time there was discussion as to whether this was 3Mn+Ca or 4 Mn ions.
  • Another group in Japan was working on the problem and in January 2003 published a 3.7Å structure (pdb 1IZL) [5]. In this work the Mn ions were also identified but seen to be translated relative to the initial Berlin work. Indeed, this variation in the Mn ions continues to dog the field.
  • In Mar. 2004 a third group, the originators of the 2-D analysis returned to the scene and reported their 3.5Å structure (pdb 1S5L). This structure was the first to propose the complete structural assignment of all the amino acid side chains and identified all the chlorophylls. It was a hugely significant step forward [6].
  • In Dec 2005 the Berlin group returned again and published a 3.0Å structure (pdb 2AXT) [7]. These last two models are illustrated below in animated <PyMOL> renditions of their structures and the overlay.
  • In November 2006 X-ray absorption spectroscopy EXAFS [8] was used on the PSII crystals to map the Mn-Mn distances as a function of the angle of the crystal. This approach was the first attempt to use this approach to solve a metal structure in a crystal.
   
  [1] Hillier and Messinger (2005) Mechanism of Photosynthetic Oxygen Production. In Wydrzynski and Satoh (eds) Photosystem II: The Light-Driven Water:Plastoquinone Oxidoreductase, pp 567-608. Springer, Dordrecht. <pdf>
  [2] Wydrzynski TJ (1977) The role of manganese in photosynthetic oxygen evolution. PhD thesis. University of Illinois at Urbana- Champaign, Illinois.
  [2a] Govindjee, Wydrzynski T and Marks SB (1978) Manganese and chloride: their roles in photosynthesis. In: Metzner H (ed) Photosynthetic Oxygen Evolution, pp 321–344. Academic Press, New York
  [3] Rhee, Morris, Barber and Kühlbrandt (1998) Nature 396, 283-286.
  [4] Zouni, Witt, Kern, Fromme , Krauß, Saenger and Orth (2001) Nature 409, 739-743.
  [5] Kamiya and Shen (2003) Proc Natl Acad Sci 100, 98-103.
  [6] Ferreira, Iverson, Maghlaoui, Barber and Iwata (2004) Science 303, 1831-1838.
  [7] Loll, Kern, Saenger, Zouni and Biesiadka (2005) Nature 438, 1040-1044.
  [8] Yano, Kern, Sauer, Latimer, Pushkar, Biesiadka, Loll, Saenger, Messinger, Zouni, Yachandra (2006) Science 314, 821-825.

Note: the following movies require Flash plug-in from Macromedia and will possibly take a moment to stream (patience please) and the movies can be downloaded below (WMV best quality).

 

Photosystem II OEC Movies

In 2004 Ferreira, Iverson, Maghaoui, Barber and Iwata published their 3D model of the PSII reaction center based on 3.5Å resolution data. Their crystal coordinates are 1S5L.pdb in the protein data base. This movie below is a 600x600 view of the environment of the Mn ions. This work generated the surprise discovery that the CP43 protein provided an additional ligand to coordinating the Mn ions. This finding was hinted at from mutagenesis, but similar findings were apparent in CP47 deletions, so was a stand out obvious association. The structure also rationalised density as a possible (bi)carbonate ligand to the Mn and suggested a "cubane" structured Mn. The OEC field had several new things to consider and several disparities with spectroscopy were apparent, including the location of the carboxy Ala344 terminus of the D1 polypeptide.

 

In 2005 Loll , Kern, Saenger, Zouni and Biesiadka published their 3D model of the PSII reaction cent er based on 3.0Å resolution data. Their crystal coordinates are 2AXT.pdb in the protein data base. This is a movie (600x600) of their Mn ions and the structure they see. Contrary to the Ferreira paper the Mn-oxo ligands are not assigned and the Mn structure is more planar.

 

A structural overlay based on c-chain overlay of 1S5L and 2AXT is apparent in the movie below. The Mn ions are translocated with respect to each other in the two structures. A controversy that has appeared is the degree of Mn reduction caused by X-ray "damage" during collection of the data sets. This damage appears unavoidable to some degree and is a consequence of the high photon fluxes of the synchrotron radiation sources used for data generation. For now it is not known why such differences are seen but the most recent structure was generated with clear awareness of the X-ray damage problem so may have the least reduced Mn ions. Obviously, at this resolution no water molecules are resolved so the question of where the O-O bond is generated remains unanswered.

Ferreira - 1S5L (Yellow), Loll - 2AXT (Blue)

 

 

In 2006 using the structural data from 3.0Å X-ray diffraction that was used to generate the 2AXT structure discussed above, the data was combined with a new approach of using EXAFS to measure the Mn-Mn distances in the same type of PSII crystals. This work then collectively came up with a best solution for the X-ray diffraction and EXAFS measurements. From this work many of the spectroscopic attributes were then rationalised and the structure of the OEC has again changed slightly. The movie below is a view of the structural motif of the four Mn ions. The nomenclature for the Mn centres has changed where Mn1, Mn2, Mn3 & Mn4 in the earlier work correspond to MnD, MnC, MnB & MnA and avoids any confusion with the oxidation states of the metal ion.

The only other "related" redox active Mn protein is the binuclear Mn catalase that is found in Lactobacillus plantarum. The di-Mn cluster has served as a important spectroscopic comparative model for the PSII field. However as you see below there is little structural homology apparent. The Mn catalase structure was published in 2001and will dismutate 2H2O2 into O2 + 2H2O via a classic 2 electron oxidation/reduction cycle.
 

emissionln

1S5L pdb Full structure (ie. dimer) from London group. <Download>

1S5L overlay with 2AXT Backbone chain overlay pdb. <Download>

2AXT pdb Full structure (ie dimer) from Berlin group. <Download>.

2AXT overlay with 1S5L Backbone chain overlay pdb. <Download>

WMV Movies PC platform (right click to save) <1S5L>, <2AXT>, <Overlay>, <MnCat>

Quicktime Movies (Large file sizes) Quicktime (right click to save) <1S5L>, <2AXT>, <Overlay>, <MnCat>

About Us | Site Host | Privacy Policy | | ©2007 PBE-RSBS, ANU